HL_6LKQ_067

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6LKQ|1|t|A|1453, 6LKQ|1|t|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_067 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.157

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6LKQ|1|t|C|1451
6LKQ|1|t|G|1452
6LKQ|1|t|A|1453
6LKQ|1|t|C|1454
6LKQ|1|t|G|1455
6LKQ|1|t|G|1456
6LKQ|1|t|U|1457
6LKQ|1|t|U|1458
6LKQ|1|t|G|1459

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L17