3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCUCGCG
Length
7 nucleotides
Bulged bases
6LKQ|1|t|U|1729, 6LKQ|1|t|C|1732
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6LKQ_074 not in the Motif Atlas
Homologous match to HL_5J7L_214
Geometric discrepancy: 0.429
The information below is about HL_5J7L_214
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08100.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6LKQ|1|t|C|1727
6LKQ|1|t|C|1728
6LKQ|1|t|U|1729
6LKQ|1|t|C|1730
6LKQ|1|t|G|1731
6LKQ|1|t|C|1732
6LKQ|1|t|G|1733

Current chains

Chain t
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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