HL_6LKQ_082

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUGAAGUGUGGACGCCAGUCUGCAUGCUUU

Length

31 nucleotides

Bulged bases

6LKQ|1|t|U|2109, 6LKQ|1|t|G|2133, 6LKQ|1|t|C|2143, 6LKQ|1|t|C|2145, 6LKQ|1|t|C|2146, 6LKQ|1|t|A|2147, 6LKQ|1|t|C|2179

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|G|2107
6LKQ|1|t|A|2108
6LKQ|1|t|U|2109
6LKQ|1|t|G|2133
6LKQ|1|t|A|2134
6LKQ|1|t|A|2135
6LKQ|1|t|G|2136
6LKQ|1|t|U|2137
6LKQ|1|t|G|2138
6LKQ|1|t|U|2139
6LKQ|1|t|G|2140
6LKQ|1|t|G|2141
6LKQ|1|t|A|2142
6LKQ|1|t|C|2143
6LKQ|1|t|G|2144
6LKQ|1|t|C|2145
6LKQ|1|t|C|2146
6LKQ|1|t|A|2147
6LKQ|1|t|G|2148
6LKQ|1|t|U|2149
6LKQ|1|t|C|2150
6LKQ|1|t|U|2151
6LKQ|1|t|G|2152
6LKQ|1|t|C|2153
6LKQ|1|t|A|2154
6LKQ|1|t|U|2155
6LKQ|1|t|G|2156
6LKQ|1|t|C|2179
6LKQ|1|t|U|2180
6LKQ|1|t|U|2181
6LKQ|1|t|U|2182

Current chains

Chain t

23S ribosomal RNA

Nearby chains