HL_6LKQ_084

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6LKQ|1|t|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LKQ_084 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0882

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6LKQ|1|t|C|2248
6LKQ|1|t|U|2249
6LKQ|1|t|G|2250
6LKQ|1|t|G|2251
6LKQ|1|t|G|2252
6LKQ|1|t|G|2253
6LKQ|1|t|C|2254
6LKQ|1|t|G|2255
6LKQ|1|t|G|2256

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16

Chain e

50S ribosomal protein L27