HL_6LKQ_106

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGUUUCGACAC

Length

12 nucleotides

Bulged bases

6LKQ|1|t|U|138, 6LKQ|1|t|U|139, 6LKQ|1|t|C|140, 6LKQ|1|t|G|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|G|134
6LKQ|1|t|U|135
6LKQ|1|t|G|136
6LKQ|1|t|U|137
6LKQ|1|t|U|138
6LKQ|1|t|U|139
6LKQ|1|t|C|140
6LKQ|1|t|G|141
6LKQ|1|t|A|142
6LKQ|1|t|C|143
6LKQ|1|t|A|144
6LKQ|1|t|C|145

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L23