HL_6LKQ_108

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGGUCGGACAUCAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|C|2301
6LKQ|1|t|U|2302
6LKQ|1|t|G|2303
6LKQ|1|t|G|2304
6LKQ|1|t|U|2305
6LKQ|1|t|C|2306
6LKQ|1|t|G|2307
6LKQ|1|t|G|2308
6LKQ|1|t|A|2309
6LKQ|1|t|C|2310
6LKQ|1|t|A|2311
6LKQ|1|t|U|2312
6LKQ|1|t|C|2313
6LKQ|1|t|A|2314
6LKQ|1|t|G|2315

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L5

Chain u

5S ribosomal RNA; 5S rRNA