HL_6LQM_038

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_038 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3206

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6LQM|1|2|C|2560
6LQM|1|2|C|2561
6LQM|1|2|G|2562
6LQM|1|2|C|2563
6LQM|1|2|G|2564
6LQM|1|2|A|2565
6LQM|1|2|G|2566
6LQM|1|2|G|2567

Current chains

Chain 2

28S rRNA

Nearby chains