HL_6LQM_042
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CGGUUCCGG
- Length
- 9 nucleotides
- Bulged bases
- 6LQM|1|2|U|2707, 6LQM|1|2|U|2708, 6LQM|1|2|C|2709, 6LQM|1|2|G|2711
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQM_042 not in the Motif Atlas
- Geometric match to HL_5J7L_149
- Geometric discrepancy: 0.3449
- The information below is about HL_5J7L_149
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_09452.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6LQM|1|2|C|2704
6LQM|1|2|G|2705
6LQM|1|2|G|2706
6LQM|1|2|U|2707
6LQM|1|2|U|2708
6LQM|1|2|C|2709
6LQM|1|2|C|2710
6LQM|1|2|G|2711
6LQM|1|2|G|2712
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain a
- 60S ribosomal protein L19
- Chain d
- 60S ribosomal protein L22
- Chain g
- 60S ribosomal protein L23a
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