HL_6LQM_057

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

6LQM|1|2|A|4214, 6LQM|1|2|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQM_057 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1353

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6LQM|1|2|U|4210
6LQM|1|2|C|4211
6LQM|1|2|A|4212
6LQM|1|2|A|4213
6LQM|1|2|A|4214
6LQM|1|2|C|4215
6LQM|1|2|G|4216
6LQM|1|2|G|4217
6LQM|1|2|U|4218
6LQM|1|2|A|4219
6LQM|1|2|6MZ|4220
6LQM|1|2|C|4221
6LQM|1|2|G|4222

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain c

60S ribosomal protein L21