HL_6LQM_060
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- 6LQM|1|2|A|4304
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQM_060 not in the Motif Atlas
- Homologous match to HL_8C3A_059
- Geometric discrepancy: 0.1772
- The information below is about HL_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34636.1
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6LQM|1|2|U|4301
6LQM|1|2|U|4302
6LQM|1|2|C|4303
6LQM|1|2|A|4304
6LQM|1|2|G|4305
6LQM|1|2|OMU|4306
6LQM|1|2|A|4307
6LQM|1|2|C|4308
6LQM|1|2|G|4309
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L27a
- Chain W
- 60S ribosomal protein L36a
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
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