HL_8C3A_059

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCAGUGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_21392.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8C3A|1|1|U|2696
8C3A|1|1|U|2697
8C3A|1|1|C|2698
8C3A|1|1|A|2699
8C3A|1|1|G|2700
8C3A|1|1|U|2701
8C3A|1|1|G|2702
8C3A|1|1|U|2703
8C3A|1|1|G|2704

Current chains

Chain 1

25S

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AB

60S ribosomal protein L28

Chain AP

60S ribosomal protein L42-B

Chain y

60S ribosomal protein L18-A