HL_6LQP_006

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQP_006 not in the Motif Atlas

Geometric match to HL_2OIU_001

Geometric discrepancy: 0.1659

The information below is about HL_2OIU_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6LQP|1|5A|A|196
6LQP|1|5A|G|197
6LQP|1|5A|A|198
6LQP|1|5A|A|199
6LQP|1|5A|A|200
6LQP|1|5A|U|201

Current chains

Chain 5A

5' ETS

Nearby chains

Chain RW

Regulator of rDNA transcription protein 14