RNA 3D Hub //

6LQP Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LQP_0031/5A/4:9No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_6LQP_0051/5A/120:125GNRA
geometric
HL_4QLM_001
HL_34789.3
HL_6LQP_0071/5A/251:257Mini UNCG
geometric
HL_5U30_001
HL_90436.3
HL_6LQP_0081/5A/301:305Mini UNCG
geometric
HL_4V9F_021
HL_90436.3
HL_6LQP_0091/5A/360:365GNRA related
geometric
HL_5J7L_179
NA
HL_6LQP_0101/5A/424:433No text annotation
HL_6LQP_0111/5A/514:521No text annotation
geometric
HL_7RQB_022
NA
HL_6LQP_0131/SA/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6LQP_0171/SA/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6LQP_0181/SA/364:381No text annotation
HL_6LQP_0191/SA/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6LQP_0211/SA/491:496GNRA
geometric
HL_4V9F_040
HL_34789.3
HL_6LQP_0221/SA/520:532No text annotation
homologous
HL_4V88_199
NA
HL_6LQP_0231/SA/561:566No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6LQP_0261/SA/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6LQP_0271/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_6LQP_0281/SA/1055:1064Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_6LQP_0291/SA/1129:1139No text annotation
HL_6LQP_0321/SA/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6LQP_0331/SA/1594:1602Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_6LQP_0341/SA/1629:1636Purine riboswitch
geometric
HL_4LX6_002
HL_46333.1
HL_6LQP_0361/SA/1778:1783No text annotation
geometric
HL_2Y8W_001
HL_40612.1

Problematic loops

#loop idProblemSequence
HL_6LQP_001No text annotation
HL_6LQP_002No text annotation
HL_6LQP_004No text annotation
HL_6LQP_006GNRA
HL_6LQP_012No text annotation
HL_6LQP_014No text annotation
HL_6LQP_015No text annotation
HL_6LQP_016No text annotation
HL_6LQP_020No text annotation
HL_6LQP_024Mini UNCG
HL_6LQP_025No text annotation
HL_6LQP_030No text annotation
HL_6LQP_031No text annotation
HL_6LQP_037tRNA anticodon loop
HL_6LQP_038GNRA
HL_6LQP_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LQP_0011/3A/6:7,
1/SA/1117:1119		Single bulged G
geometric
IL_3IGI_004
IL_28408.2
IL_6LQP_0021/3A/48:50,
1/5A/466:470		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_6LQP_0031/3A/78:85,
1/3A/325:329		No text annotation
IL_6LQP_0881/3A/85:96,
1/3A/320:325		No text annotation
IL_6LQP_0041/3A/97:98,
1/3A/317:319		No text annotation
IL_6LQP_0051/3A/111:115,
1/3A/252:259		No text annotation
IL_6LQP_0071/5A/17:18,
1/5A/62:64		Single bulged G
geometric
IL_3NDB_004
NA
IL_6LQP_1011/5A/94:95,
1/5A/149:156		No text annotation
IL_6LQP_0091/5A/97:99,
1/5A/145:147		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_6LQP_0101/5A/100:104,
1/5A/140:144		No text annotation
IL_6LQP_0111/5A/107:110,
1/5A/136:137		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQP_0121/5A/116:117,
1/5A/128:130		Single bulged U
geometric
IL_4V88_469
NA
IL_6LQP_0131/5A/167:173,
1/5A/223:228		No text annotation
IL_6LQP_0161/5A/238:240,
1/5A/273:274		Single bulged U
geometric
IL_6JDV_003
IL_97561.3
IL_6LQP_0171/5A/245:246,
1/5A/266:268		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_6LQP_0181/5A/250:251,
1/5A/257:262		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_6LQP_0191/5A/337:340,
1/5A/386:387		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.2
IL_6LQP_0201/5A/340:341,
1/5A/384:386		Single bulged A
geometric
IL_1JZV_002
IL_14190.2
IL_6LQP_0211/5A/342:343,
1/5A/381:383		Single bulged U
geometric
IL_4FRG_002
IL_97561.3
IL_6LQP_0221/5A/346:349,
1/5A/375:378		Tandem non-canonical cWW pairs
geometric
IL_280D_001
NA
IL_6LQP_0911/5A/352:355,
1/5A/371:372		No text annotation
IL_6LQP_0921/5A/352:356,
1/5A/369:372		No text annotation
IL_6LQP_0241/5A/355:356,
1/5A/369:371		Stack outside cWW
geometric
IL_1NTA_001
IL_77710.1
IL_6LQP_0251/5A/402:407,
1/5A/449:455		No text annotation
IL_6LQP_0261/5A/413:414,
1/5A/441:443		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQP_0271/5A/414:415,
1/5A/439:441		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_6LQP_0291/5A/497:499,
1/5A/539:542		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
NA
IL_6LQP_0301/5A/501:503,
1/5A/533:537		No text annotation
IL_6LQP_0311/5A/505:507,
1/5A/529:531		Isolated non-canonical cWW pair
geometric
IL_5MSF_001
IL_01003.3
IL_6LQP_0321/5A/510:511,
1/5A/524:526		Single bulged U
geometric
IL_6UFH_004
IL_97561.3
IL_6LQP_0341/SA/24:26,
1/SA/600:601		Single bulged C
geometric
IL_7KGA_001
IL_05642.2
IL_6LQP_0351/SA/50:53,
1/SA/427:429		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_6LQP_0361/SA/58:63,
1/SA/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6LQP_0381/SA/109:112,
1/SA/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6LQP_0391/SA/113:116,
1/SA/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6LQP_0931/SA/113:117,
1/SA/299:301		Decoding loop related
geometric
IL_2O3X_003
IL_53541.1
IL_6LQP_0401/SA/117:122,
1/SA/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6LQP_0411/SA/143:149,
1/SA/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6LQP_0421/SA/150:152,
1/SA/162:164		Isolated cWH basepair
geometric
IL_4KQ0_004
IL_10892.2
IL_6LQP_0441/SA/206:208,
1/SA/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_6LQP_0481/SA/311:316,
1/SA/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6LQP_0491/SA/318:323,
1/SA/345:346		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_6LQP_0501/SA/389:391,
1/SA/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6LQP_0511/SA/443:447,
1/SA/460:461		C-loop
geometric
IL_5J7L_018
NA
IL_6LQP_0521/SA/447:448,
1/SA/458:460		Single bulged G
geometric
IL_5J7L_019
NA
IL_6LQP_0531/SA/482:483,
1/SA/504:506		Single bulged A
homologous
IL_4V88_409
NA
IL_6LQP_0541/SA/514:516,
1/SA/536:543		No text annotation
homologous
IL_8C3A_420
NA
IL_6LQP_0551/SA/517:520,
1/SA/532:535		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.2
IL_6LQP_0561/SA/551:552,
1/SA/584:587		No text annotation
geometric
IL_5J7L_341
NA
IL_6LQP_0571/SA/552:559,
1/SA/568:584		No text annotation
IL_6LQP_0581/SA/624:626,
1/SA/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6LQP_0591/SA/627:631,
1/SA/969:972		No text annotation
IL_6LQP_0601/SA/631:632,
1/SA/967:969		Single stack bend
geometric
IL_7A0S_054
IL_15011.2
IL_6LQP_0631/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
homologous
IL_4V88_428
NA
IL_6LQP_0951/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_6UFH_004
IL_97561.3
IL_6LQP_0961/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_5TBW_068
NA
IL_6LQP_0661/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6LQP_0671/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6LQP_0681/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6LQP_0691/SA/1033:1034,
1/SA/1083:1085		Single bulged A
geometric
IL_5CNR_002
IL_14190.2
IL_6LQP_0701/SA/1035:1039,
1/SA/1079:1082		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6LQP_0711/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6LQP_0721/SA/1051:1053,
1/SA/1066:1067		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQP_0731/SA/1157:1160,
1/SA/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6LQP_0741/SA/1173:1174,
1/SA/1464:1466		Single stack bend
geometric
IL_7RQB_058
NA
IL_6LQP_0751/SA/1174:1176,
1/SA/1463:1464		Minor groove platform
geometric
IL_5TBW_039
NA
IL_6LQP_0761/SA/1212:1216,
1/SA/1448:1451		No text annotation
IL_6LQP_0971/SA/1480:1493,
1/SA/1514:1527		No text annotation
IL_6LQP_0791/SA/1495:1498,
1/SA/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6LQP_0801/SA/1650:1652,
1/SA/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6LQP_1031/SA/1653:1659,
1/SA/1742:1747		No text annotation
IL_6LQP_0871/SA/1696:1699,
1/SA/1703:1705		No text annotation
geometric
IL_4V87_185
NA

Problematic loops

#loop idProblemSequence
IL_6LQP_006No text annotation
IL_6LQP_008Isolated non-canonical cWW pair
IL_6LQP_089No text annotation
IL_6LQP_014No text annotation
IL_6LQP_090Isolated non-canonical cWW pair
IL_6LQP_015Tandem non-canonical cWW pairs
IL_6LQP_023No text annotation
IL_6LQP_028Single bulged A
IL_6LQP_033Isolated non-canonical cWW contact
IL_6LQP_102No text annotation
IL_6LQP_037Triple sheared related
IL_6LQP_043Major groove platform with extra cWW
IL_6LQP_045No text annotation
IL_6LQP_046Single bulged A
IL_6LQP_047No text annotation
IL_6LQP_094No text annotation
IL_6LQP_061Isolated non-canonical cWW pair
IL_6LQP_062No text annotation
IL_6LQP_064Tandem non-canonical cWW pairs
IL_6LQP_065Tandem non-canonical cWW pairs
IL_6LQP_077No text annotation
IL_6LQP_078No text annotation
IL_6LQP_081No text annotation
IL_6LQP_098No text annotation
IL_6LQP_082Tandem non-canonical cWW pairs
IL_6LQP_099Isolated non-canonical cWW pair
IL_6LQP_083Double sheared
IL_6LQP_084Isolated non-canonical cWW pair
IL_6LQP_100No text annotation
IL_6LQP_085No text annotation
IL_6LQP_086Isolated near basepair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LQP_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6LQP_0071/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_6LQP_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6LQP_0041/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
J3_6LQP_0081/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_6LQP_0051/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J4_6LQP_0011/SA/99:107,
1/SA/307:310,
1/SA/357:364,
1/SA/381:384		No text annotation
J5_6LQP_0011/3A/54:62,
1/5A/291:299,
1/5A/307:333,
1/5A/391:397,
1/5A/460:462		No text annotation
J5_6LQP_0021/SA/31:37,
1/SA/471:479,
1/SA/509:514,
1/SA/543:546,
1/SA/592:595		No text annotation
J5_6LQP_0031/SA/31:37,
1/SA/471:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

#loop idProblemSequence
J3_6LQP_001No text annotation
J3_6LQP_006No text annotation

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