HL_6LQP_007

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUCUUG

Length

7 nucleotides

Bulged bases

6LQP|1|5A|U|253, 6LQP|1|5A|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQP_007 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1744

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6LQP|1|5A|C|251
6LQP|1|5A|A|252
6LQP|1|5A|U|253
6LQP|1|5A|C|254
6LQP|1|5A|U|255
6LQP|1|5A|U|256
6LQP|1|5A|G|257

Current chains

Chain 5A

5' ETS

Nearby chains

Chain RI

Ribosome biogenesis protein UTP30

Chain RJ

Ribosome biogenesis protein BMS1

Chain RW

Regulator of rDNA transcription protein 14

Chain SA

Small subunit ribosomal RNA; SSU rRNA