HL_6LQP_010

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAACACC

Length

10 nucleotides

Bulged bases

6LQP|1|5A|A|427, 6LQP|1|5A|C|430, 6LQP|1|5A|C|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|5A|G|424
6LQP|1|5A|U|425
6LQP|1|5A|G|426
6LQP|1|5A|A|427
6LQP|1|5A|A|428
6LQP|1|5A|A|429
6LQP|1|5A|C|430
6LQP|1|5A|A|431
6LQP|1|5A|C|432
6LQP|1|5A|C|433

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3C

rRNA 2'-O-methyltransferase fibrillarin

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5J

rRNA-processing protein FCF2