HL_6LQP_018

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAUAAGGGUUCGAUUC

Length

18 nucleotides

Bulged bases

6LQP|1|SA|G|371, 6LQP|1|SA|G|372, 6LQP|1|SA|U|374, 6LQP|1|SA|U|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|SA|G|364
6LQP|1|SA|G|365
6LQP|1|SA|A|366
6LQP|1|SA|A|367
6LQP|1|SA|U|368
6LQP|1|SA|A|369
6LQP|1|SA|A|370
6LQP|1|SA|G|371
6LQP|1|SA|G|372
6LQP|1|SA|G|373
6LQP|1|SA|U|374
6LQP|1|SA|U|375
6LQP|1|SA|C|376
6LQP|1|SA|G|377
6LQP|1|SA|A|378
6LQP|1|SA|U|379
6LQP|1|SA|U|380
6LQP|1|SA|C|381

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SK

40S ribosomal protein S9-A

Chain SM

40S ribosomal protein S11-A