HL_6LQP_027

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQP_027 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1078

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQP|1|SA|C|937
6LQP|1|SA|G|938
6LQP|1|SA|A|939
6LQP|1|SA|A|940
6LQP|1|SA|A|941
6LQP|1|SA|G|942

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RC

KRR1 small subunit processome component

Chain SO

40S ribosomal protein S13