HL_6LQP_030

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAAGGAUUGACAUUCUUGAUUU

Length

23 nucleotides

Bulged bases

6LQP|1|SA|G|1228, 6LQP|1|SA|U|1257

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|SA|A|1224
6LQP|1|SA|U|1225
6LQP|1|SA|A|1226
6LQP|1|SA|A|1227
6LQP|1|SA|G|1228
6LQP|1|SA|G|1229
6LQP|1|SA|A|1230
6LQP|1|SA|U|1231
6LQP|1|SA|U|1232
6LQP|1|SA|G|1233
6LQP|1|SA|A|1234
6LQP|1|SA|C|1235
6LQP|1|SA|A|1236
6LQP|1|SA|U|1250
6LQP|1|SA|U|1251
6LQP|1|SA|C|1252
6LQP|1|SA|U|1253
6LQP|1|SA|U|1254
6LQP|1|SA|G|1255
6LQP|1|SA|A|1256
6LQP|1|SA|U|1257
6LQP|1|SA|U|1258
6LQP|1|SA|U|1259

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1

Chain SN

40S ribosomal protein S12