HL_6LQQ_007
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UAAUA
- Length
- 5 nucleotides
- Bulged bases
- 6LQQ|1|5A|A|302, 6LQQ|1|5A|U|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQQ_007 not in the Motif Atlas
- Geometric match to HL_4V9F_021
- Geometric discrepancy: 0.1451
- The information below is about HL_4V9F_021
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_90436.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 37
Unit IDs
6LQQ|1|5A|U|301
6LQQ|1|5A|A|302
6LQQ|1|5A|A|303
6LQQ|1|5A|U|304
6LQQ|1|5A|A|305
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain B1
- Periodic tryptophan protein 2
- Chain BE
- U3 small nucleolar RNA-associated protein 21
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