RNA 3D Hub //

6LQQ Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LQQ_0071/5A/301:305Mini UNCG
geometric
HL_4V9F_021
HL_90436.1
HL_6LQQ_0111/SA/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6LQQ_0171/SA/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6LQQ_0201/SA/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6LQQ_0211/SA/561:566No text annotation
geometric
HL_5NFV_001
HL_69752.3
HL_6LQQ_0241/SA/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6LQQ_0251/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_6LQQ_0261/SA/1055:1064Mini UNCG
geometric
HL_4YAZ_004
HL_90436.1
HL_6LQQ_0271/SA/1129:1139No text annotation
HL_6LQQ_0311/SA/1594:1602Mini UNCG
geometric
HL_4OOG_001
NA
HL_6LQQ_0321/SA/1629:1636Purine riboswitch
geometric
HL_4LX6_002
HL_78364.1

Problematic loops

#loop idProblemSequence
HL_6LQQ_001No text annotation
HL_6LQQ_002No text annotation
HL_6LQQ_003No text annotation
HL_6LQQ_004No text annotation
HL_6LQQ_005No text annotation
HL_6LQQ_006No text annotation
HL_6LQQ_008GNRA related
HL_6LQQ_009No text annotation
HL_6LQQ_010No text annotation
HL_6LQQ_012No text annotation
HL_6LQQ_013No text annotation
HL_6LQQ_014No text annotation
HL_6LQQ_015GNRA related
HL_6LQQ_016No text annotation
HL_6LQQ_018No text annotation
HL_6LQQ_019GNRA
HL_6LQQ_022Mini UNCG
HL_6LQQ_023No text annotation
HL_6LQQ_028No text annotation
HL_6LQQ_029No text annotation
HL_6LQQ_030GNRA
HL_6LQQ_035tRNA anticodon loop
HL_6LQQ_036GNRA
HL_6LQQ_033No text annotation
HL_6LQQ_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LQQ_0011/3A/6:7,
1/SA/1117:1119		Single bulged G
geometric
IL_3IGI_004
IL_28408.1
IL_6LQQ_0031/3A/78:85,
1/3A/325:329		No text annotation
IL_6LQQ_0791/3A/85:96,
1/3A/320:325		No text annotation
IL_6LQQ_0051/3A/111:115,
1/3A/252:259		No text annotation
IL_6LQQ_0121/5A/337:340,
1/5A/386:387		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.1
IL_6LQQ_0251/SA/24:26,
1/SA/600:601		Single bulged C
geometric
IL_7KGA_001
NA
IL_6LQQ_0261/SA/50:53,
1/SA/427:429		No text annotation
geometric
IL_4N0T_004
IL_32983.1
IL_6LQQ_0301/SA/113:116,
1/SA/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6LQQ_0821/SA/113:117,
1/SA/299:301		Decoding loop related
geometric
IL_2O3X_003
IL_61702.1
IL_6LQQ_0311/SA/117:122,
1/SA/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6LQQ_0321/SA/143:149,
1/SA/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6LQQ_0351/SA/206:208,
1/SA/257:259		Isolated non-canonical cWW pair
geometric
IL_5ZTM_002
NA
IL_6LQQ_0421/SA/443:447,
1/SA/460:461		C-loop
geometric
IL_5J7L_018
NA
IL_6LQQ_0431/SA/447:448,
1/SA/458:460		Single bulged G
geometric
IL_5J7L_019
NA
IL_6LQQ_0451/SA/514:516,
1/SA/536:543		No text annotation
homologous
IL_8C3A_420
NA
IL_6LQQ_0461/SA/517:520,
1/SA/532:535		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.1
IL_6LQQ_0471/SA/551:552,
1/SA/584:587		No text annotation
geometric
IL_5J7L_341
NA
IL_6LQQ_0481/SA/552:559,
1/SA/568:584		No text annotation
IL_6LQQ_0491/SA/624:626,
1/SA/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6LQQ_0501/SA/627:631,
1/SA/969:972		No text annotation
IL_6LQQ_0541/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6LQQ_0841/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_6UFH_004
NA
IL_6LQQ_0851/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_5TBW_068
NA
IL_6LQQ_0571/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6LQQ_0581/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6LQQ_0591/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6LQQ_0611/SA/1035:1039,
1/SA/1079:1082		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_6LQQ_0621/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6LQQ_0631/SA/1051:1053,
1/SA/1066:1067		Single stack bend
geometric
IL_4C7O_002
NA
IL_6LQQ_0641/SA/1157:1160,
1/SA/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6LQQ_0861/SA/1480:1493,
1/SA/1514:1527		No text annotation
IL_6LQQ_0921/SA/1653:1659,
1/SA/1742:1747		No text annotation

Problematic loops

#loop idProblemSequence
IL_6LQQ_002No text annotation
IL_6LQQ_004No text annotation
IL_6LQQ_006No text annotation
IL_6LQQ_007Single bulged G
IL_6LQQ_008Isolated non-canonical cWW pair
IL_6LQQ_090No text annotation
IL_6LQQ_009Isolated cWH basepair
IL_6LQQ_010Single bulged U
IL_6LQQ_011Single bulged U
IL_6LQQ_013Single bulged A
IL_6LQQ_014Single bulged U
IL_6LQQ_015Tandem non-canonical cWW pairs
IL_6LQQ_016No text annotation
IL_6LQQ_080No text annotation
IL_6LQQ_081No text annotation
IL_6LQQ_017Stack outside cWW
IL_6LQQ_018Single stack bend
IL_6LQQ_019Single bulged U
IL_6LQQ_020Isolated non-canonical cWW pair
IL_6LQQ_021No text annotation
IL_6LQQ_022Isolated non-canonical cWW pair
IL_6LQQ_023Single bulged U
IL_6LQQ_024Isolated non-canonical cWW contact
IL_6LQQ_027No text annotation
IL_6LQQ_091No text annotation
IL_6LQQ_028Triple sheared related
IL_6LQQ_029Tandem non-canonical cWW pairs
IL_6LQQ_033Isolated cWH basepair
IL_6LQQ_034Major groove platform with extra cWW
IL_6LQQ_036No text annotation
IL_6LQQ_037Single bulged A
IL_6LQQ_038No text annotation
IL_6LQQ_083No text annotation
IL_6LQQ_039Kink-turn with non-sequential stacking
IL_6LQQ_040No text annotation
IL_6LQQ_041Isolated cWH basepair
IL_6LQQ_044Single bulged A
IL_6LQQ_051Single stack bend
IL_6LQQ_052Isolated non-canonical cWW pair
IL_6LQQ_053No text annotation
IL_6LQQ_055Tandem non-canonical cWW pairs
IL_6LQQ_056Tandem non-canonical cWW pairs
IL_6LQQ_060Single bulged A
IL_6LQQ_065Single stack bend
IL_6LQQ_066Minor groove platform
IL_6LQQ_067No text annotation
IL_6LQQ_068No text annotation
IL_6LQQ_069No text annotation
IL_6LQQ_070Tandem non-canonical cWW pairs
IL_6LQQ_071Isolated non-canonical cWW pair
IL_6LQQ_072No text annotation
IL_6LQQ_087No text annotation
IL_6LQQ_073Tandem non-canonical cWW pairs
IL_6LQQ_088Isolated non-canonical cWW pair
IL_6LQQ_074Double sheared
IL_6LQQ_075Isolated non-canonical cWW pair
IL_6LQQ_089No text annotation
IL_6LQQ_076No text annotation
IL_6LQQ_077Isolated near basepair
IL_6LQQ_078No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LQQ_0021/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6LQQ_0071/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_6LQQ_0031/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6LQQ_0041/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
J3_6LQQ_0081/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J5_6LQQ_0011/SA/31:37,
1/SA/471:479,
1/SA/509:514,
1/SA/543:546,
1/SA/592:595		No text annotation
J5_6LQQ_0021/SA/31:37,
1/SA/471:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

#loop idProblemSequence
J3_6LQQ_001No text annotation
J3_6LQQ_005No text annotation
J3_6LQQ_006No text annotation
J4_6LQQ_001No text annotation

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