HL_6LQQ_016
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GGAAUAAGGGUUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6LQQ|1|SA|G|371, 6LQQ|1|SA|G|372, 6LQQ|1|SA|U|374, 6LQQ|1|SA|U|375
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQQ|1|SA|G|364
6LQQ|1|SA|G|365
6LQQ|1|SA|A|366
6LQQ|1|SA|A|367
6LQQ|1|SA|U|368
6LQQ|1|SA|A|369
6LQQ|1|SA|A|370
6LQQ|1|SA|G|371
6LQQ|1|SA|G|372
6LQQ|1|SA|G|373
6LQQ|1|SA|U|374
6LQQ|1|SA|U|375
6LQQ|1|SA|C|376
6LQQ|1|SA|G|377
6LQQ|1|SA|A|378
6LQQ|1|SA|U|379
6LQQ|1|SA|U|380
6LQQ|1|SA|C|381
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 3F
- Ribosomal RNA-processing protein 9
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain SF
- 40S ribosomal protein S4-A
- Chain SK
- 40S ribosomal protein S9-A
- Chain SM
- 40S ribosomal protein S11-A
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