HL_6LQQ_020
3D structure
- PDB id
- 6LQQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQQ_020 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1497
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6LQQ|1|SA|A|520
6LQQ|1|SA|A|521
6LQQ|1|SA|U|522
6LQQ|1|SA|G|523
6LQQ|1|SA|U|524
6LQQ|1|SA|A|525
6LQQ|1|SA|A|526
6LQQ|1|SA|A|527
6LQQ|1|SA|U|528
6LQQ|1|SA|A|529
6LQQ|1|SA|C|530
6LQQ|1|SA|C|531
6LQQ|1|SA|U|532
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain RB
- U3 small nucleolar ribonucleoprotein protein LCP5
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
- Chain SZ
- 40S ribosomal protein S24-A
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