HL_6LQQ_023

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCUAUUUUCUA

Length

11 nucleotides

Bulged bases

6LQQ|1|SA|U|839

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|U|826
6LQQ|1|SA|C|827
6LQQ|1|SA|U|828
6LQQ|1|SA|A|829
6LQQ|1|SA|U|830
6LQQ|1|SA|U|839
6LQQ|1|SA|U|840
6LQQ|1|SA|U|841
6LQQ|1|SA|C|842
6LQQ|1|SA|U|843
6LQQ|1|SA|A|844

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20