HL_6LQQ_028

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUAAGGAUUGACAUUCUUGAUUU

Length

23 nucleotides

Bulged bases

6LQQ|1|SA|G|1228, 6LQQ|1|SA|U|1257

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|SA|A|1224
6LQQ|1|SA|U|1225
6LQQ|1|SA|A|1226
6LQQ|1|SA|A|1227
6LQQ|1|SA|G|1228
6LQQ|1|SA|G|1229
6LQQ|1|SA|A|1230
6LQQ|1|SA|U|1231
6LQQ|1|SA|U|1232
6LQQ|1|SA|G|1233
6LQQ|1|SA|A|1234
6LQQ|1|SA|C|1235
6LQQ|1|SA|A|1236
6LQQ|1|SA|U|1250
6LQQ|1|SA|U|1251
6LQQ|1|SA|C|1252
6LQQ|1|SA|U|1253
6LQQ|1|SA|U|1254
6LQQ|1|SA|G|1255
6LQQ|1|SA|A|1256
6LQQ|1|SA|U|1257
6LQQ|1|SA|U|1258
6LQQ|1|SA|U|1259

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1