HL_6LQQ_035

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGCAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQQ_035 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.252

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6LQQ|1|SA|G|1697
6LQQ|1|SA|G|1698
6LQQ|1|SA|G|1699
6LQQ|1|SA|C|1700
6LQQ|1|SA|A|1701
6LQQ|1|SA|A|1702
6LQQ|1|SA|C|1703
6LQQ|1|SA|U|1704

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RE

U3 small nucleolar RNA-associated protein 22