HL_6LQR_013

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

GGAAUAAGGGUUCGAUUC

Length

18 nucleotides

Bulged bases

6LQR|1|SA|G|371, 6LQR|1|SA|G|372, 6LQR|1|SA|U|374, 6LQR|1|SA|U|375

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQR|1|SA|G|364
6LQR|1|SA|G|365
6LQR|1|SA|A|366
6LQR|1|SA|A|367
6LQR|1|SA|U|368
6LQR|1|SA|A|369
6LQR|1|SA|A|370
6LQR|1|SA|G|371
6LQR|1|SA|G|372
6LQR|1|SA|G|373
6LQR|1|SA|U|374
6LQR|1|SA|U|375
6LQR|1|SA|C|376
6LQR|1|SA|G|377
6LQR|1|SA|A|378
6LQR|1|SA|U|379
6LQR|1|SA|U|380
6LQR|1|SA|C|381

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SK

40S ribosomal protein S9-A

Chain SM

40S ribosomal protein S11-A