6LQR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6LQR_001 | No text annotation | ||
| HL_6LQR_002 | No text annotation | ||
| HL_6LQR_003 | No text annotation | ||
| HL_6LQR_004 | No text annotation | ||
| HL_6LQR_005 | Mini UNCG | ||
| HL_6LQR_006 | No text annotation | ||
| HL_6LQR_007 | No text annotation | ||
| HL_6LQR_008 | GNRA related | ||
| HL_6LQR_009 | No text annotation | ||
| HL_6LQR_010 | No text annotation | ||
| HL_6LQR_011 | No text annotation | ||
| HL_6LQR_012 | GNRA related | ||
| HL_6LQR_013 | No text annotation | ||
| HL_6LQR_014 | No text annotation | ||
| HL_6LQR_015 | No text annotation | ||
| HL_6LQR_016 | GNRA | ||
| HL_6LQR_017 | No text annotation | ||
| HL_6LQR_018 | No text annotation | ||
| HL_6LQR_019 | Mini UNCG | ||
| HL_6LQR_020 | No text annotation | ||
| HL_6LQR_021 | No text annotation | ||
| HL_6LQR_022 | GNRA | ||
| HL_6LQR_023 | Mini UNCG | ||
| HL_6LQR_024 | No text annotation | ||
| HL_6LQR_025 | No text annotation | ||
| HL_6LQR_026 | No text annotation | ||
| HL_6LQR_027 | No text annotation | ||
| HL_6LQR_028 | Mini UNCG | ||
| HL_6LQR_029 | Purine riboswitch | ||
| HL_6LQR_032 | tRNA anticodon loop | ||
| HL_6LQR_034 | GNRA | ||
| HL_6LQR_030 | No text annotation | ||
| HL_6LQR_031 | No text annotation | ||
| HL_6LQR_033 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6LQR_001 | Single bulged G | ||
| IL_6LQR_002 | No text annotation | ||
| IL_6LQR_003 | No text annotation | ||
| IL_6LQR_066 | No text annotation | ||
| IL_6LQR_004 | No text annotation | ||
| IL_6LQR_005 | No text annotation | ||
| IL_6LQR_006 | No text annotation | ||
| IL_6LQR_007 | Single bulged G | ||
| IL_6LQR_008 | Isolated non-canonical cWW pair | ||
| IL_6LQR_009 | No text annotation | ||
| IL_6LQR_010 | Isolated non-canonical cWW pair | ||
| IL_6LQR_011 | Single bulged U | ||
| IL_6LQR_012 | Isolated non-canonical cWW contact | ||
| IL_6LQR_013 | Single bulged C | ||
| IL_6LQR_014 | No text annotation | ||
| IL_6LQR_015 | No text annotation | ||
| IL_6LQR_075 | No text annotation | ||
| IL_6LQR_016 | Triple sheared related | ||
| IL_6LQR_017 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_018 | Multiple bulged bases | ||
| IL_6LQR_067 | Decoding loop related | ||
| IL_6LQR_019 | No text annotation | ||
| IL_6LQR_020 | tWH-tWH-tHW-tHW | ||
| IL_6LQR_021 | Isolated cWH basepair | ||
| IL_6LQR_022 | Major groove platform with extra cWW | ||
| IL_6LQR_023 | Isolated non-canonical cWW pair | ||
| IL_6LQR_024 | No text annotation | ||
| IL_6LQR_025 | Single bulged A | ||
| IL_6LQR_026 | No text annotation | ||
| IL_6LQR_068 | No text annotation | ||
| IL_6LQR_027 | Kink-turn with non-sequential stacking | ||
| IL_6LQR_028 | No text annotation | ||
| IL_6LQR_029 | Isolated cWH basepair | ||
| IL_6LQR_030 | C-loop | ||
| IL_6LQR_031 | Single bulged G | ||
| IL_6LQR_032 | Single bulged A | ||
| IL_6LQR_033 | No text annotation | ||
| IL_6LQR_034 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_035 | No text annotation | ||
| IL_6LQR_036 | No text annotation | ||
| IL_6LQR_037 | Isolated non-canonical cWW pair | ||
| IL_6LQR_038 | No text annotation | ||
| IL_6LQR_039 | Single stack bend | ||
| IL_6LQR_040 | Isolated non-canonical cWW pair | ||
| IL_6LQR_041 | No text annotation | ||
| IL_6LQR_042 | Major groove platform; stack outside cWW | ||
| IL_6LQR_043 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_069 | Single bulged U | ||
| IL_6LQR_070 | Isolated non-canonical cWW pair | ||
| IL_6LQR_044 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_045 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_046 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_047 | Kink-turn related | ||
| IL_6LQR_048 | Single bulged A | ||
| IL_6LQR_049 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_050 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_051 | Single stack bend | ||
| IL_6LQR_052 | C-loop | ||
| IL_6LQR_053 | Single stack bend | ||
| IL_6LQR_054 | Minor groove platform | ||
| IL_6LQR_055 | No text annotation | ||
| IL_6LQR_056 | No text annotation | ||
| IL_6LQR_057 | No text annotation | ||
| IL_6LQR_058 | Isolated non-canonical cWW pair | ||
| IL_6LQR_076 | No text annotation | ||
| IL_6LQR_059 | No text annotation | ||
| IL_6LQR_071 | No text annotation | ||
| IL_6LQR_060 | Tandem non-canonical cWW pairs | ||
| IL_6LQR_072 | Isolated non-canonical cWW pair | ||
| IL_6LQR_061 | Double sheared | ||
| IL_6LQR_062 | Isolated non-canonical cWW pair | ||
| IL_6LQR_073 | No text annotation | ||
| IL_6LQR_063 | No text annotation | ||
| IL_6LQR_064 | Isolated near basepair | ||
| IL_6LQR_065 | No text annotation | ||
| IL_6LQR_074 | Single stack bend |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6LQR_001 | No text annotation | ||
| J3_6LQR_002 | No text annotation | ||
| J3_6LQR_007 | No text annotation | ||
| J3_6LQR_003 | No text annotation | ||
| J3_6LQR_004 | No text annotation | ||
| J3_6LQR_008 | No text annotation | ||
| J3_6LQR_005 | No text annotation | ||
| J3_6LQR_006 | No text annotation | ||
| J4_6LQR_001 | No text annotation | ||
| J5_6LQR_001 | No text annotation | ||
| J5_6LQR_002 | No text annotation |
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