HL_6LQR_025

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

AUAAGGAUUGACAUUCUUGAUUU

Length

23 nucleotides

Bulged bases

6LQR|1|SA|G|1228, 6LQR|1|SA|U|1257

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQR|1|SA|A|1224
6LQR|1|SA|U|1225
6LQR|1|SA|A|1226
6LQR|1|SA|A|1227
6LQR|1|SA|G|1228
6LQR|1|SA|G|1229
6LQR|1|SA|A|1230
6LQR|1|SA|U|1231
6LQR|1|SA|U|1232
6LQR|1|SA|G|1233
6LQR|1|SA|A|1234
6LQR|1|SA|C|1235
6LQR|1|SA|A|1236
6LQR|1|SA|U|1250
6LQR|1|SA|U|1251
6LQR|1|SA|C|1252
6LQR|1|SA|U|1253
6LQR|1|SA|U|1254
6LQR|1|SA|G|1255
6LQR|1|SA|A|1256
6LQR|1|SA|U|1257
6LQR|1|SA|U|1258
6LQR|1|SA|U|1259

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1