HL_6LQR_026

3D structure

PDB id

6LQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.6 Å

Loop

Sequence

GUGCAUUGAUGC

Length

12 nucleotides

Bulged bases

6LQR|1|SA|A|1436

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQR_026 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1931

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6LQR|1|SA|G|1271
6LQR|1|SA|U|1272
6LQR|1|SA|G|1273
6LQR|1|SA|C|1274
6LQR|1|SA|A|1275
6LQR|1|SA|U|1276
6LQR|1|SA|U|1434
6LQR|1|SA|G|1435
6LQR|1|SA|A|1436
6LQR|1|SA|U|1437
6LQR|1|SA|G|1438
6LQR|1|SA|C|1439

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RS

Essential nuclear protein 1