HL_6LQR_028
3D structure
- PDB id
- 6LQR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.6 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 6LQR|1|SA|U|1595, 6LQR|1|SA|C|1596, 6LQR|1|SA|G|1601
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQR_028 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3365
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
6LQR|1|SA|G|1594
6LQR|1|SA|U|1595
6LQR|1|SA|C|1596
6LQR|1|SA|A|1597
6LQR|1|SA|U|1598
6LQR|1|SA|C|1599
6LQR|1|SA|A|1600
6LQR|1|SA|G|1601
6LQR|1|SA|C|1602
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
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