HL_6LQS_001

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUGCAUUUUAUG

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|3A|C|201
6LQS|1|3A|G|202
6LQS|1|3A|U|203
6LQS|1|3A|U|204
6LQS|1|3A|G|205
6LQS|1|3A|C|206
6LQS|1|3A|A|207
6LQS|1|3A|U|242
6LQS|1|3A|U|243
6LQS|1|3A|U|244
6LQS|1|3A|U|245
6LQS|1|3A|A|246
6LQS|1|3A|U|247
6LQS|1|3A|G|248

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3F

Ribosomal RNA-processing protein 9