RNA 3D Hub //

6LQS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LQS_0041/5A/301:305Mini UNCG
geometric
HL_4V9F_021
HL_90436.3
HL_6LQS_0071/SA/70:81Externally structured
geometric
HL_8C3A_022
NA
HL_6LQS_0111/SA/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6LQS_0141/SA/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6LQS_0151/SA/491:496No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_6LQS_0331/SA/518:533No text annotation
HL_6LQS_0161/SA/520:532No text annotation
geometric
HL_4V88_199
NA
HL_6LQS_0171/SA/561:566No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6LQS_0221/SA/937:942GNRA
homologous
HL_4V88_207
NA
HL_6LQS_0231/SA/1055:1064Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_6LQS_0241/SA/1129:1139No text annotation
HL_6LQS_0281/SA/1594:1602No text annotation
HL_6LQS_0291/SA/1629:1636Externally structured
geometric
HL_8C3A_022
NA
HL_6LQS_0301/SA/1698:1703GNRA
geometric
HL_5J7L_164
NA

Problematic loops

#loop idProblemSequence
HL_6LQS_001No text annotation
HL_6LQS_002No text annotation
HL_6LQS_003No text annotation
HL_6LQS_005No text annotation
HL_6LQS_006No text annotation
HL_6LQS_008GNRA related
HL_6LQS_009No text annotation
HL_6LQS_032No text annotation
HL_6LQS_010UNCG
HL_6LQS_012Mini UNCG
HL_6LQS_013GNRA related
HL_6LQS_018No text annotation
HL_6LQS_019No text annotation
HL_6LQS_020No text annotation
HL_6LQS_021No text annotation
HL_6LQS_025No text annotation
HL_6LQS_026No text annotation
HL_6LQS_027No text annotation
HL_6LQS_031No text annotation
HL_6LQS_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LQS_0011/3A/6:7,
1/SA/1117:1119		Single bulged G
geometric
IL_3IGI_004
IL_28408.2
IL_6LQS_0021/3A/48:51,
1/5A/465:470		No text annotation
IL_6LQS_0031/3A/78:85,
1/3A/325:329		No text annotation
IL_6LQS_0691/3A/85:96,
1/3A/320:325		No text annotation
IL_6LQS_0041/3A/97:98,
1/3A/317:319		No text annotation
IL_6LQS_0051/3A/101:106,
1/3A/310:314		No text annotation
IL_6LQS_0061/3A/111:115,
1/3A/252:259		No text annotation
IL_6LQS_0111/SA/24:26,
1/SA/600:601		Single bulged C
geometric
IL_1DQF_001
NA
IL_6LQS_0121/SA/35:37,
1/SA/471:473		Isolated non-canonical cWW pair
homologous
IL_4V88_385
NA
IL_6LQS_0141/SA/58:63,
1/SA/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6LQS_0151/SA/64:69,
1/SA/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6LQS_0171/SA/113:116,
1/SA/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6LQS_0181/SA/117:122,
1/SA/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6LQS_0191/SA/144:149,
1/SA/165:171		tWH-tWH-tHW-tHW
geometric
IL_4LFB_009
IL_00680.1
IL_6LQS_0811/SA/150:152,
1/SA/162:164		No text annotation
homologous
IL_8P9A_384
IL_87720.1
IL_6LQS_0221/SA/204:206,
1/SA/259:263		Major groove platform with extra cWW
geometric
IL_7RQB_022
NA
IL_6LQS_0231/SA/206:208,
1/SA/257:259		Isolated non-canonical cWW pair
homologous
IL_4V88_398
NA
IL_6LQS_0241/SA/265:267,
1/SA/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6LQS_0251/SA/270:273,
1/SA/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6LQS_0291/SA/439:441,
1/SA/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_6LQS_0301/SA/443:447,
1/SA/460:461		C-loop
geometric
IL_5J7L_018
NA
IL_6LQS_0311/SA/447:448,
1/SA/458:460		Single bulged G
geometric
IL_5J7L_019
NA
IL_6LQS_0321/SA/480:482,
1/SA/505:508		Isolated cWH basepair
geometric
IL_6F4H_001
NA
IL_6LQS_0331/SA/514:516,
1/SA/536:543		No text annotation
homologous
IL_8C3A_420
NA
IL_6LQS_0721/SA/517:518,
1/SA/533:535		Minor groove platform
homologous
IL_8C3A_501
NA
IL_6LQS_0351/SA/518:520,
1/SA/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6LQS_0361/SA/551:552,
1/SA/584:587		Multiple bulged bases
geometric
IL_3IGI_013
IL_44609.2
IL_6LQS_0371/SA/552:559,
1/SA/568:584		No text annotation
IL_6LQS_0381/SA/624:626,
1/SA/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6LQS_0391/SA/627:631,
1/SA/969:972		No text annotation
IL_6LQS_0401/SA/631:632,
1/SA/967:969		Single stack bend
geometric
IL_5TBW_070
NA
IL_6LQS_0411/SA/646:648,
1/SA/686:688		Isolated non-canonical cWW pair
homologous
IL_4V88_419
NA
IL_6LQS_0421/SA/652:655,
1/SA/679:682		Tandem non-canonical cWW pairs
geometric
IL_5TBW_128
NA
IL_6LQS_0731/SA/652:658,
1/SA/677:682		No text annotation
IL_6LQS_0441/SA/746:747,
1/SA/802:805		No text annotation
IL_6LQS_0741/SA/748:750,
1/SA/799:801		Isolated non-canonical cWW pair
homologous
IL_8P9A_413
IL_71625.2
IL_6LQS_0751/SA/751:776,
1/SA/784:798		No text annotation
IL_6LQS_0461/SA/865:866,
1/SA/962:965		Major groove platform; stack outside cWW
geometric
IL_4V88_428
NA
IL_6LQS_0821/SA/868:869,
1/SA/958:960		Single bulged U
geometric
IL_7KVT_002
IL_97561.3
IL_6LQS_0481/SA/871:873,
1/SA/954:956		Isolated non-canonical cWW pair
geometric
IL_2R8S_001
IL_01003.3
IL_6LQS_0491/SA/874:878,
1/SA/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6LQS_0501/SA/885:888,
1/SA/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6LQS_0511/SA/893:899,
1/SA/910:919		Kink-turn related
homologous
IL_8C3A_440
NA
IL_6LQS_0521/SA/1041:1044,
1/SA/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6LQS_0531/SA/1051:1053,
1/SA/1066:1067		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQS_0541/SA/1157:1160,
1/SA/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6LQS_0771/SA/1173:1175,
1/SA/1464:1466		Isolated non-canonical cWW pair
homologous
IL_8P9A_432
IL_01003.3
IL_6LQS_0601/SA/1650:1652,
1/SA/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6LQS_0611/SA/1653:1658,
1/SA/1742:1747		No text annotation
IL_6LQS_0681/SA/1692:1695,
1/SA/1706:1709		No text annotation

Problematic loops

#loop idProblemSequence
IL_6LQS_007No text annotation
IL_6LQS_008Single bulged G
IL_6LQS_009No text annotation
IL_6LQS_070No text annotation
IL_6LQS_010Isolated non-canonical cWW pair
IL_6LQS_013Single stack bend
IL_6LQS_016Tandem non-canonical cWW pairs
IL_6LQS_020Tandem non-canonical cWW pairs
IL_6LQS_071No text annotation
IL_6LQS_021Double sheared
IL_6LQS_026Single bulged U
IL_6LQS_027Kink-turn with non-sequential stacking
IL_6LQS_028No text annotation
IL_6LQS_034Minor groove platform with extra cWW
IL_6LQS_043No text annotation
IL_6LQS_045Tandem non-canonical cWW pairs
IL_6LQS_076No text annotation
IL_6LQS_047No text annotation
IL_6LQS_055Tandem non-canonical cWW pairs
IL_6LQS_056No text annotation
IL_6LQS_057No text annotation
IL_6LQS_058No text annotation
IL_6LQS_059No text annotation
IL_6LQS_062Single stack bend
IL_6LQS_063No text annotation
IL_6LQS_078No text annotation
IL_6LQS_064Double sheared
IL_6LQS_065Isolated non-canonical cWW pair
IL_6LQS_079No text annotation
IL_6LQS_066Single stack bend
IL_6LQS_067Minor groove platform
IL_6LQS_080Single stack bend

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LQS_0011/SA/633:635,
1/SA/861:865,
1/SA/965:966		No text annotation
homologous
J3_8P9A_071
J3_01633.1
J3_6LQS_0051/SA/633:635,
1/SA/861:866,
1/SA/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.5
J3_6LQS_0021/SA/881:884,
1/SA/928:936,
1/SA/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6LQS_0031/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
J3_6LQS_0061/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_6LQS_0041/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_8C3A_039
NA
J5_6LQS_0011/SA/31:37,
1/SA/471:479,
1/SA/509:514,
1/SA/543:546,
1/SA/592:595		No text annotation
J5_6LQS_0021/SA/31:37,
1/SA/471:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

No problematic loops


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