HL_6LQS_004

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

6LQS|1|5A|A|302, 6LQS|1|5A|U|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_004 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.1311

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6LQS|1|5A|U|301
6LQS|1|5A|A|302
6LQS|1|5A|A|303
6LQS|1|5A|U|304
6LQS|1|5A|A|305

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain B1

Periodic tryptophan protein 2

Chain BE

U3 small nucleolar RNA-associated protein 21