HL_6LQS_006

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_006 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3138

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6LQS|1|5A|A|553
6LQS|1|5A|G|554
6LQS|1|5A|A|555
6LQS|1|5A|U|582
6LQS|1|5A|U|583
6LQS|1|5A|U|584

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5J

rRNA-processing protein FCF2

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain B8

U3 small nucleolar RNA-associated protein 18

Chain RQ

U3 small nucleolar RNA-associated protein 14