HL_6LQS_022

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQS_022 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1438

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQS|1|SA|C|937
6LQS|1|SA|G|938
6LQS|1|SA|A|939
6LQS|1|SA|A|940
6LQS|1|SA|A|941
6LQS|1|SA|G|942

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SO

40S ribosomal protein S13

Chain SP

40S ribosomal protein S14-A