HL_6LQS_025

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGGAUUGACAUUCUUGAUU

Length

20 nucleotides

Bulged bases

6LQS|1|SA|A|1227, 6LQS|1|SA|G|1228, 6LQS|1|SA|G|1229, 6LQS|1|SA|U|1231, 6LQS|1|SA|C|1235

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|A|1226
6LQS|1|SA|A|1227
6LQS|1|SA|G|1228
6LQS|1|SA|G|1229
6LQS|1|SA|A|1230
6LQS|1|SA|U|1231
6LQS|1|SA|U|1232
6LQS|1|SA|G|1233
6LQS|1|SA|A|1234
6LQS|1|SA|C|1235
6LQS|1|SA|A|1236
6LQS|1|SA|U|1250
6LQS|1|SA|U|1251
6LQS|1|SA|C|1252
6LQS|1|SA|U|1253
6LQS|1|SA|U|1254
6LQS|1|SA|G|1255
6LQS|1|SA|A|1256
6LQS|1|SA|U|1257
6LQS|1|SA|U|1258

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RS

Essential nuclear protein 1