HL_6LQS_027

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCAGCGAGUAAC

Length

13 nucleotides

Bulged bases

6LQS|1|SA|A|1487, 6LQS|1|SA|G|1488, 6LQS|1|SA|U|1489

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|G|1480
6LQS|1|SA|C|1481
6LQS|1|SA|C|1482
6LQS|1|SA|A|1483
6LQS|1|SA|G|1484
6LQS|1|SA|C|1485
6LQS|1|SA|G|1486
6LQS|1|SA|A|1487
6LQS|1|SA|G|1488
6LQS|1|SA|U|1489
6LQS|1|SA|A|1525
6LQS|1|SA|A|1526
6LQS|1|SA|C|1527

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain SG

40S ribosomal protein S5

Chain SR

40S ribosomal protein S16-A