HL_6LQS_028

3D structure

PDB id

6LQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

6LQS|1|SA|U|1595, 6LQS|1|SA|C|1596, 6LQS|1|SA|G|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQS|1|SA|G|1594
6LQS|1|SA|U|1595
6LQS|1|SA|C|1596
6LQS|1|SA|A|1597
6LQS|1|SA|U|1598
6LQS|1|SA|C|1599
6LQS|1|SA|A|1600
6LQS|1|SA|G|1601
6LQS|1|SA|C|1602

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RJ

Ribosome biogenesis protein BMS1

Chain RN

Nucleolar complex protein 14