HL_6LQT_010

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

6LQT|1|SA|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQT_010 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3657

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6LQT|1|SA|C|190
6LQT|1|SA|C|191
6LQT|1|SA|U|192
6LQT|1|SA|U|193
6LQT|1|SA|U|194
6LQT|1|SA|G|195

Current chains

Chain SA

18S pre-rRNA

Nearby chains