6LQT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6LQT_024 | 1/SA/1055:1064 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.3 | |
| HL_6LQT_028 | 1/SA/1594:1602 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6LQT_001 | No text annotation | ||
| HL_6LQT_002 | No text annotation | ||
| HL_6LQT_003 | No text annotation | ||
| HL_6LQT_004 | No text annotation | ||
| HL_6LQT_005 | Mini UNCG | ||
| HL_6LQT_006 | No text annotation | ||
| HL_6LQT_007 | No text annotation | ||
| HL_6LQT_008 | Externally structured | ||
| HL_6LQT_009 | GNRA related | ||
| HL_6LQT_010 | No text annotation | ||
| HL_6LQT_032 | No text annotation | ||
| HL_6LQT_011 | UNCG | ||
| HL_6LQT_012 | T-loop with 1 bulged base | ||
| HL_6LQT_013 | Mini UNCG | ||
| HL_6LQT_014 | GNRA related | ||
| HL_6LQT_015 | No text annotation | ||
| HL_6LQT_016 | No text annotation | ||
| HL_6LQT_033 | No text annotation | ||
| HL_6LQT_017 | No text annotation | ||
| HL_6LQT_018 | No text annotation | ||
| HL_6LQT_019 | No text annotation | ||
| HL_6LQT_020 | No text annotation | ||
| HL_6LQT_021 | No text annotation | ||
| HL_6LQT_022 | No text annotation | ||
| HL_6LQT_023 | GNRA | ||
| HL_6LQT_025 | No text annotation | ||
| HL_6LQT_026 | No text annotation | ||
| HL_6LQT_027 | No text annotation | ||
| HL_6LQT_029 | Externally structured | ||
| HL_6LQT_030 | GNRA | ||
| HL_6LQT_031 | No text annotation | ||
| HL_6LQT_034 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6LQT_037 | 1/SA/552:559, 1/SA/568:584 | No text annotation | ||
| IL_6LQT_050 | 1/SA/885:888, 1/SA/924:927 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_6LQT_051 | 1/SA/893:899, 1/SA/910:919 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_6LQT_054 | 1/SA/1157:1160, 1/SA/1617:1621 | C-loop | homologous IL_4V88_443 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6LQT_001 | Single bulged G | ||
| IL_6LQT_002 | No text annotation | ||
| IL_6LQT_003 | No text annotation | ||
| IL_6LQT_066 | No text annotation | ||
| IL_6LQT_004 | No text annotation | ||
| IL_6LQT_005 | No text annotation | ||
| IL_6LQT_006 | No text annotation | ||
| IL_6LQT_007 | No text annotation | ||
| IL_6LQT_008 | Single bulged G | ||
| IL_6LQT_009 | No text annotation | ||
| IL_6LQT_067 | No text annotation | ||
| IL_6LQT_010 | Isolated non-canonical cWW pair | ||
| IL_6LQT_011 | Single bulged C | ||
| IL_6LQT_012 | Isolated non-canonical cWW pair | ||
| IL_6LQT_013 | Single stack bend | ||
| IL_6LQT_014 | No text annotation | ||
| IL_6LQT_015 | No text annotation | ||
| IL_6LQT_016 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_017 | Multiple bulged bases | ||
| IL_6LQT_018 | No text annotation | ||
| IL_6LQT_019 | tWH-tWH-tHW-tHW | ||
| IL_6LQT_078 | No text annotation | ||
| IL_6LQT_020 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_068 | No text annotation | ||
| IL_6LQT_021 | Double sheared | ||
| IL_6LQT_022 | Major groove platform with extra cWW | ||
| IL_6LQT_023 | Isolated non-canonical cWW pair | ||
| IL_6LQT_024 | Single bulged A | ||
| IL_6LQT_025 | No text annotation | ||
| IL_6LQT_026 | Single bulged U | ||
| IL_6LQT_027 | Kink-turn with non-sequential stacking | ||
| IL_6LQT_028 | No text annotation | ||
| IL_6LQT_029 | Single bulged U | ||
| IL_6LQT_030 | C-loop | ||
| IL_6LQT_031 | Single bulged G | ||
| IL_6LQT_032 | Isolated cWH basepair | ||
| IL_6LQT_033 | No text annotation | ||
| IL_6LQT_034 | Minor groove platform with extra cWW | ||
| IL_6LQT_069 | Minor groove platform | ||
| IL_6LQT_035 | Minor groove platform | ||
| IL_6LQT_036 | Multiple bulged bases | ||
| IL_6LQT_038 | Isolated non-canonical cWW pair | ||
| IL_6LQT_039 | No text annotation | ||
| IL_6LQT_040 | Single stack bend | ||
| IL_6LQT_041 | Isolated non-canonical cWW pair | ||
| IL_6LQT_042 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_070 | No text annotation | ||
| IL_6LQT_043 | No text annotation | ||
| IL_6LQT_044 | No text annotation | ||
| IL_6LQT_045 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_071 | Isolated non-canonical cWW pair | ||
| IL_6LQT_072 | No text annotation | ||
| IL_6LQT_046 | Major groove platform; stack outside cWW | ||
| IL_6LQT_073 | No text annotation | ||
| IL_6LQT_047 | No text annotation | ||
| IL_6LQT_079 | Single bulged U | ||
| IL_6LQT_048 | Isolated non-canonical cWW pair | ||
| IL_6LQT_049 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_052 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_053 | Single stack bend | ||
| IL_6LQT_074 | Isolated non-canonical cWW pair | ||
| IL_6LQT_055 | Tandem non-canonical cWW pairs | ||
| IL_6LQT_056 | No text annotation | ||
| IL_6LQT_057 | Isolated non-canonical cWW pair | ||
| IL_6LQT_058 | No text annotation | ||
| IL_6LQT_059 | Single stack bend | ||
| IL_6LQT_060 | No text annotation | ||
| IL_6LQT_075 | No text annotation | ||
| IL_6LQT_061 | Double sheared | ||
| IL_6LQT_062 | Isolated non-canonical cWW pair | ||
| IL_6LQT_076 | No text annotation | ||
| IL_6LQT_063 | Single stack bend | ||
| IL_6LQT_064 | Minor groove platform | ||
| IL_6LQT_065 | No text annotation | ||
| IL_6LQT_077 | Single stack bend |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6LQT_001 | 1/SA/633:635, 1/SA/861:865, 1/SA/965:966 | No text annotation | homologous J3_8P9A_071 J3_01633.1 | |
| J3_6LQT_005 | 1/SA/633:635, 1/SA/861:866, 1/SA/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_6LQT_003 | 1/SA/1150:1151, 1/SA/1627:1629, 1/SA/1636:1640 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6LQT_002 | No text annotation | ||
| J3_6LQT_006 | No text annotation | ||
| J3_6LQT_004 | No text annotation | ||
| J5_6LQT_001 | No text annotation | ||
| J5_6LQT_002 | No text annotation |
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