HL_6LQT_026

3D structure

PDB id

6LQT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GGC

Length

3 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQT_026 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1058

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6LQT|1|SA|G|1178
6LQT|1|SA|G|1179
6LQT|1|SA|C|1461

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain 5G

U3 small nucleolar ribonucleoprotein protein IMP4

Chain RN

Nucleolar complex protein 14