HL_6LQU_025

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQU_025 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1154

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6LQU|1|SA|C|937
6LQU|1|SA|G|938
6LQU|1|SA|A|939
6LQU|1|SA|A|940
6LQU|1|SA|A|941
6LQU|1|SA|G|942

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RC

KRR1 small subunit processome component

Chain SO

40S ribosomal protein S13