RNA 3D Hub //

6LQU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6LQU_0031/5A/4:9No text annotation
geometric
HL_5U3G_001
HL_75660.7
HL_6LQU_0071/5A/251:257Mini UNCG
geometric
HL_5U30_001
HL_90436.2
HL_6LQU_0081/5A/301:305Mini UNCG
geometric
HL_4V9F_021
HL_90436.2
HL_6LQU_0101/5A/424:433No text annotation
HL_6LQU_0211/SA/491:496GNRA
geometric
HL_4V9F_040
HL_34789.2
HL_6LQU_0231/SA/561:566No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_6LQU_0271/SA/1129:1139No text annotation
HL_6LQU_0301/SA/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6LQU_0311/SA/1594:1602Mini UNCG
geometric
HL_4OOG_001
HL_12626.2
HL_6LQU_0321/SA/1629:1636Purine riboswitch
geometric
HL_4LX6_002
HL_46333.1

Problematic loops

#loop idProblemSequence
HL_6LQU_001No text annotation
HL_6LQU_002No text annotation
HL_6LQU_004No text annotation
HL_6LQU_005GNRA
HL_6LQU_006GNRA
HL_6LQU_009GNRA related
HL_6LQU_011No text annotation
HL_6LQU_012No text annotation
HL_6LQU_013GNRA related
HL_6LQU_014No text annotation
HL_6LQU_015No text annotation
HL_6LQU_016No text annotation
HL_6LQU_017GNRA related
HL_6LQU_018No text annotation
HL_6LQU_019No text annotation
HL_6LQU_020No text annotation
HL_6LQU_022No text annotation
HL_6LQU_035No text annotation
HL_6LQU_024No text annotation
HL_6LQU_025GNRA
HL_6LQU_026No text annotation
HL_6LQU_028No text annotation
HL_6LQU_029No text annotation
HL_6LQU_033GNRA
HL_6LQU_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6LQU_0021/3A/48:50,
1/5A/466:470		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_6LQU_0031/3A/78:85,
1/3A/325:329		No text annotation
IL_6LQU_0861/3A/85:96,
1/3A/320:325		No text annotation
IL_6LQU_0051/3A/111:115,
1/3A/252:259		No text annotation
IL_6LQU_0071/5A/17:18,
1/5A/62:64		Single bulged G
geometric
IL_3NDB_004
NA
IL_6LQU_0961/5A/94:95,
1/5A/149:156		No text annotation
IL_6LQU_0091/5A/97:99,
1/5A/145:147		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_6LQU_0101/5A/100:104,
1/5A/140:144		No text annotation
IL_6LQU_0111/5A/107:110,
1/5A/136:137		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQU_0121/5A/116:117,
1/5A/128:130		Single bulged U
geometric
IL_4V88_469
NA
IL_6LQU_0131/5A/167:173,
1/5A/223:228		No text annotation
IL_6LQU_0161/5A/238:240,
1/5A/273:274		Single bulged U
geometric
IL_6JDV_003
IL_97561.2
IL_6LQU_0171/5A/245:246,
1/5A/266:268		Single bulged U
geometric
IL_7KVT_002
IL_97561.2
IL_6LQU_0181/5A/250:251,
1/5A/257:262		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_6LQU_0191/5A/337:340,
1/5A/386:387		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.2
IL_6LQU_0201/5A/340:341,
1/5A/384:386		Single bulged A
geometric
IL_1JZV_002
IL_14190.2
IL_6LQU_0211/5A/342:343,
1/5A/381:383		Single bulged U
geometric
IL_4FRG_002
IL_97561.2
IL_6LQU_0221/5A/346:349,
1/5A/375:378		Tandem non-canonical cWW pairs
geometric
IL_280D_001
NA
IL_6LQU_0251/5A/402:407,
1/5A/449:455		No text annotation
IL_6LQU_0261/5A/413:414,
1/5A/441:443		Single stack bend
geometric
IL_4C7O_002
IL_15011.2
IL_6LQU_0271/5A/414:415,
1/5A/439:441		Single bulged U
geometric
IL_7KVT_002
IL_97561.2
IL_6LQU_0301/5A/501:503,
1/5A/533:537		No text annotation
IL_6LQU_0531/SA/482:483,
1/SA/504:506		Single bulged A
homologous
IL_4V88_409
NA
IL_6LQU_0561/SA/551:552,
1/SA/584:587		No text annotation
geometric
IL_5J7L_341
NA
IL_6LQU_0571/SA/552:559,
1/SA/568:584		No text annotation
IL_6LQU_0691/SA/1157:1160,
1/SA/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6LQU_0701/SA/1173:1174,
1/SA/1464:1466		Single stack bend
geometric
IL_7RQB_058
NA
IL_6LQU_0711/SA/1174:1176,
1/SA/1463:1464		Minor groove platform
geometric
IL_5TBW_039
NA
IL_6LQU_0941/SA/1480:1493,
1/SA/1514:1527		No text annotation
IL_6LQU_0751/SA/1495:1498,
1/SA/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6LQU_0761/SA/1649:1652,
1/SA/1748:1751		Tandem non-canonical cWW pairs
geometric
IL_5J7L_283
NA
IL_6LQU_0991/SA/1653:1658,
1/SA/1742:1747		No text annotation
IL_6LQU_0781/SA/1659:1664,
1/SA/1737:1741		No text annotation

Problematic loops

#loop idProblemSequence
IL_6LQU_001Single bulged G
IL_6LQU_004No text annotation
IL_6LQU_006No text annotation
IL_6LQU_008Isolated non-canonical cWW pair
IL_6LQU_087No text annotation
IL_6LQU_014No text annotation
IL_6LQU_088Isolated non-canonical cWW pair
IL_6LQU_015Tandem non-canonical cWW pairs
IL_6LQU_023No text annotation
IL_6LQU_089No text annotation
IL_6LQU_090No text annotation
IL_6LQU_024Stack outside cWW
IL_6LQU_028Single bulged A
IL_6LQU_029Isolated non-canonical cWW pair
IL_6LQU_031Isolated non-canonical cWW pair
IL_6LQU_032Single bulged U
IL_6LQU_033Isolated non-canonical cWW contact
IL_6LQU_034Single bulged C
IL_6LQU_035No text annotation
IL_6LQU_036No text annotation
IL_6LQU_097No text annotation
IL_6LQU_037Triple sheared related
IL_6LQU_038Tandem non-canonical cWW pairs
IL_6LQU_039Multiple bulged bases
IL_6LQU_091Decoding loop related
IL_6LQU_040No text annotation
IL_6LQU_041tWH-tWH-tHW-tHW
IL_6LQU_042Isolated cWH basepair
IL_6LQU_043Major groove platform with extra cWW
IL_6LQU_044Isolated non-canonical cWW pair
IL_6LQU_045No text annotation
IL_6LQU_046Single bulged A
IL_6LQU_047No text annotation
IL_6LQU_092No text annotation
IL_6LQU_048Kink-turn with non-sequential stacking
IL_6LQU_049No text annotation
IL_6LQU_050Isolated cWH basepair
IL_6LQU_051C-loop
IL_6LQU_052Single bulged G
IL_6LQU_054No text annotation
IL_6LQU_055Tandem non-canonical cWW pairs
IL_6LQU_058No text annotation
IL_6LQU_059Single stack bend
IL_6LQU_060No text annotation
IL_6LQU_061Major groove platform; stack outside cWW
IL_6LQU_093Isolated non-canonical cWW pair
IL_6LQU_062Tandem non-canonical cWW pairs
IL_6LQU_098Single bulged U
IL_6LQU_063Isolated non-canonical cWW pair
IL_6LQU_064Tandem non-canonical cWW pairs
IL_6LQU_065Tandem non-canonical cWW pairs
IL_6LQU_066Kink-turn related
IL_6LQU_067Other IL
IL_6LQU_068tSH-tHW-tHS
IL_6LQU_072No text annotation
IL_6LQU_073No text annotation
IL_6LQU_074No text annotation
IL_6LQU_077No text annotation
IL_6LQU_079Isolated non-canonical cWW pair
IL_6LQU_080Double sheared
IL_6LQU_081Isolated non-canonical cWW pair
IL_6LQU_082Tandem non-canonical cWW pairs
IL_6LQU_095No text annotation
IL_6LQU_083Triple sheared
IL_6LQU_084Single stack bend
IL_6LQU_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6LQU_0031/SA/1150:1151,
1/SA/1627:1629,
1/SA/1636:1640		No text annotation
J3_6LQU_0061/SA/1161:1164,
1/SA/1581:1587,
1/SA/1609:1616		No text annotation
homologous
J3_8C3A_038
NA
J3_6LQU_0041/SA/1168:1171,
1/SA/1468:1470,
1/SA/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J5_6LQU_0011/3A/54:62,
1/5A/291:299,
1/5A/307:333,
1/5A/391:397,
1/5A/460:462		No text annotation
J5_6LQU_0021/SA/31:37,
1/SA/471:479,
1/SA/509:514,
1/SA/543:546,
1/SA/592:595		No text annotation
J5_6LQU_0031/SA/31:37,
1/SA/471:479,
1/SA/509:516,
1/SA/536:546,
1/SA/592:595		No text annotation

Problematic loops

#loop idProblemSequence
J3_6LQU_001No text annotation
J3_6LQU_002No text annotation
J3_6LQU_005No text annotation
J4_6LQU_001No text annotation

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