HL_6LQU_035

3D structure

PDB id

6LQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQU|1|SA|G|899
6LQU|1|SA|A|900
6LQU|1|SA|G|901
6LQU|1|SA|G|902
6LQU|1|SA|U|903
6LQU|1|SA|G|904
6LQU|1|SA|A|905
6LQU|1|SA|A|906
6LQU|1|SA|A|907
6LQU|1|SA|U|908
6LQU|1|SA|U|909
6LQU|1|SA|C|910

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13

Chain RC

KRR1 small subunit processome component

Chain SP

40S ribosomal protein S14-A