HL_6LQV_010

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6LQV|1|SA|C|233

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6LQV_010 not in the Motif Atlas

Geometric match to HL_4WF9_009

Geometric discrepancy: 0.3838

The information below is about HL_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87381.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

6LQV|1|SA|C|230
6LQV|1|SA|U|231
6LQV|1|SA|U|232
6LQV|1|SA|C|233
6LQV|1|SA|G|234
6LQV|1|SA|G|235

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20