6LQV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6LQV_001 | No text annotation | ||
| HL_6LQV_002 | No text annotation | ||
| HL_6LQV_003 | No text annotation | ||
| HL_6LQV_004 | No text annotation | ||
| HL_6LQV_005 | Mini UNCG | ||
| HL_6LQV_006 | Purine riboswitch | ||
| HL_6LQV_007 | No text annotation | ||
| HL_6LQV_008 | GNRA related | ||
| HL_6LQV_009 | No text annotation | ||
| HL_6LQV_010 | No text annotation | ||
| HL_6LQV_011 | No text annotation | ||
| HL_6LQV_012 | GNRA related | ||
| HL_6LQV_013 | No text annotation | ||
| HL_6LQV_014 | No text annotation | ||
| HL_6LQV_015 | No text annotation | ||
| HL_6LQV_016 | GNRA | ||
| HL_6LQV_017 | No text annotation | ||
| HL_6LQV_018 | No text annotation | ||
| HL_6LQV_019 | No text annotation | ||
| HL_6LQV_020 | No text annotation | ||
| HL_6LQV_021 | No text annotation | ||
| HL_6LQV_022 | No text annotation | ||
| HL_6LQV_023 | Mini UNCG | ||
| HL_6LQV_024 | Purine riboswitch |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6LQV_034 | 1/SA/552:559, 1/SA/568:584 | No text annotation | ||
| IL_6LQV_035 | 1/SA/1157:1160, 1/SA/1617:1621 | C-loop | homologous IL_4V88_443 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6LQV_001 | Single bulged G | ||
| IL_6LQV_002 | No text annotation | ||
| IL_6LQV_003 | No text annotation | ||
| IL_6LQV_046 | No text annotation | ||
| IL_6LQV_004 | No text annotation | ||
| IL_6LQV_005 | No text annotation | ||
| IL_6LQV_006 | No text annotation | ||
| IL_6LQV_007 | Single bulged G | ||
| IL_6LQV_008 | Isolated non-canonical cWW pair | ||
| IL_6LQV_009 | No text annotation | ||
| IL_6LQV_010 | Isolated non-canonical cWW contact | ||
| IL_6LQV_011 | Single bulged C | ||
| IL_6LQV_012 | No text annotation | ||
| IL_6LQV_013 | No text annotation | ||
| IL_6LQV_051 | No text annotation | ||
| IL_6LQV_014 | Triple sheared related | ||
| IL_6LQV_015 | Tandem non-canonical cWW pairs | ||
| IL_6LQV_016 | Multiple bulged bases | ||
| IL_6LQV_047 | Decoding loop related | ||
| IL_6LQV_017 | No text annotation | ||
| IL_6LQV_018 | tWH-tWH-tHW-tHW | ||
| IL_6LQV_019 | Isolated cWH basepair | ||
| IL_6LQV_020 | Major groove platform with extra cWW | ||
| IL_6LQV_021 | Isolated non-canonical cWW pair | ||
| IL_6LQV_022 | No text annotation | ||
| IL_6LQV_023 | Single bulged A | ||
| IL_6LQV_024 | No text annotation | ||
| IL_6LQV_048 | No text annotation | ||
| IL_6LQV_025 | Kink-turn with non-sequential stacking | ||
| IL_6LQV_026 | No text annotation | ||
| IL_6LQV_027 | Isolated cWH basepair | ||
| IL_6LQV_028 | C-loop | ||
| IL_6LQV_029 | Single bulged G | ||
| IL_6LQV_030 | Single bulged A | ||
| IL_6LQV_031 | No text annotation | ||
| IL_6LQV_032 | Tandem non-canonical cWW pairs | ||
| IL_6LQV_033 | No text annotation | ||
| IL_6LQV_036 | Single stack bend | ||
| IL_6LQV_037 | Minor groove platform | ||
| IL_6LQV_038 | No text annotation | ||
| IL_6LQV_039 | No text annotation | ||
| IL_6LQV_040 | No text annotation | ||
| IL_6LQV_041 | Isolated non-canonical cWW pair | ||
| IL_6LQV_052 | No text annotation | ||
| IL_6LQV_042 | No text annotation | ||
| IL_6LQV_049 | No text annotation | ||
| IL_6LQV_043 | Tandem non-canonical cWW pairs | ||
| IL_6LQV_050 | Isolated non-canonical cWW pair | ||
| IL_6LQV_044 | Double sheared | ||
| IL_6LQV_045 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6LQV_003 | 1/SA/1150:1151, 1/SA/1627:1629, 1/SA/1636:1640 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6LQV_001 | No text annotation | ||
| J3_6LQV_002 | No text annotation | ||
| J3_6LQV_006 | No text annotation | ||
| J3_6LQV_004 | No text annotation | ||
| J3_6LQV_005 | No text annotation | ||
| J4_6LQV_001 | No text annotation | ||
| J5_6LQV_001 | No text annotation | ||
| J5_6LQV_002 | No text annotation |
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