HL_6LQV_016
3D structure
- PDB id
- 6LQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- CAUUCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQV_016 not in the Motif Atlas
- Geometric match to HL_4V9F_040
- Geometric discrepancy: 0.2354
- The information below is about HL_4V9F_040
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
6LQV|1|SA|C|491
6LQV|1|SA|A|492
6LQV|1|SA|U|493
6LQV|1|SA|U|494
6LQV|1|SA|C|495
6LQV|1|SA|G|496
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain 5J
- rRNA-processing protein FCF2
- Chain 5K
- rRNA-processing protein FCF1
- Chain RJ
- Ribosome biogenesis protein BMS1
Coloring options: