HL_6LQV_018
3D structure
- PDB id
- 6LQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GGUGCC
- Length
- 6 nucleotides
- Bulged bases
- 6LQV|1|SA|U|563
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6LQV_018 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.1933
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6LQV|1|SA|G|561
6LQV|1|SA|G|562
6LQV|1|SA|U|563
6LQV|1|SA|G|564
6LQV|1|SA|C|565
6LQV|1|SA|C|566
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain RN
- Nucleolar complex protein 14
- Chain SY
- 40S ribosomal protein S23-A
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