HL_6LQV_019

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGAAACUUAAA

Length

11 nucleotides

Bulged bases

6LQV|1|SA|A|1133, 6LQV|1|SA|U|1135

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQV|1|SA|U|1129
6LQV|1|SA|G|1130
6LQV|1|SA|A|1131
6LQV|1|SA|A|1132
6LQV|1|SA|A|1133
6LQV|1|SA|C|1134
6LQV|1|SA|U|1135
6LQV|1|SA|U|1136
6LQV|1|SA|A|1137
6LQV|1|SA|A|1138
6LQV|1|SA|A|1139

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain B2

U3 small nucleolar RNA-associated protein 12

Chain RK

RNA 3'-terminal phosphate cyclase-like protein

Chain RN

Nucleolar complex protein 14