HL_6LQV_020

3D structure

PDB id

6LQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AUAAGGAUUGACAUUCUUGAUUU

Length

23 nucleotides

Bulged bases

6LQV|1|SA|G|1228, 6LQV|1|SA|U|1257

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQV|1|SA|A|1224
6LQV|1|SA|U|1225
6LQV|1|SA|A|1226
6LQV|1|SA|A|1227
6LQV|1|SA|G|1228
6LQV|1|SA|G|1229
6LQV|1|SA|A|1230
6LQV|1|SA|U|1231
6LQV|1|SA|U|1232
6LQV|1|SA|G|1233
6LQV|1|SA|A|1234
6LQV|1|SA|C|1235
6LQV|1|SA|A|1236
6LQV|1|SA|U|1250
6LQV|1|SA|U|1251
6LQV|1|SA|C|1252
6LQV|1|SA|U|1253
6LQV|1|SA|U|1254
6LQV|1|SA|G|1255
6LQV|1|SA|A|1256
6LQV|1|SA|U|1257
6LQV|1|SA|U|1258
6LQV|1|SA|U|1259

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1